writes "The software driving Bitcoin's network was upgraded Wednesday, with security fixes addressing a problem that defunct bitcoin exchange Mt. Gox blamed for losing nearly half a billion dollars worth of bitcoins. The latest version of bitcoin's software, 0.9.0, contains more than a half dozen fixes for transaction malleability, according to the release notes for the software. Bitcoin Core also contains a new feature for payment requests. Previously, merchants couldn't attach a note describing an invoice, and people also could not supply a refund address to a merchant. The latest version automatically supplies a refund address."
This wouldn't have prevented the Mt. Gox implosion since they weren't using the reference implementation. The foundation also renamed the software to "Bitcoin Core" to avoid confusion between Bitcoin-the-network and Bitcoin-the-reference-implementation,